Effect of selective logging on the genetic differentiation of Juglans pyriformis Liebm. populations

https://doi.org/10.17221/131/2022-JFSCitation:

Acosta-Hernández C.C., Iglesias-Andreu L.G., Luna-Rodríguez M., Octavio-Aguilar P. (2022): Effect of selective logging on the genetic differentiation of Juglans pyriformis Liebm. populations. J. For. Sci., 68: 509–518.

download PDF

Juglans pyriformis Liebm. (Juglandaceae) is a threatened and endemic tree that grows in the cloud forest of Mexico. Natural populations of this species have been reduced due to, among others, changes in land use, overexploitation, and logging, with probable effects on its genetic diversity and structure. To determine the levels of variation and genetic structure of two populations with different silvicultural regimes, six inter-simple sequence repeat (ISSR) primers were used to amplify DNA from 35 individuals from a high-logging population and 32 from a low-logging population. The results show a higher polymorphism in the low-logging population (81.5%) compared to the high-logging population (77.4%). The genetic differentiation coefficient (PhiPT) values (0.109), genetic distance (0.134) and STRUCTURE analysis (Fst = 0.2271, P = 0.04) show significant genetic differentiation between populations. Rare, private, and monomorphic bands were detected in both populations. These results confirm the trend of reduced genetic variation due to logging.

References:
Acosta-Hernández C.C., Luna-Rodríguez M., Noa-Carrazana J.C., Galindo-González J., Vázquez-Torres S.M., Morales-Romero Z., Iglesias-Andreu L.G. (2011a): Morphological and dasometric characteritation of Juglans pyriformis Liebm., a threatened species. Revista Chapingo. Serie Ciencias Forestales y del Ambiente, 17: 59–67. (in Spanish)
 
Acosta-Hernández C.C., Luna-Rodríguez M., Octavio-Aguilar P., Morales-Romero Z., Galindo-González J., Noa-Carrazana J.C., Vázquez-Torres S.M, Iglesias-Andreu L.G. (2011b): Effect of forest harvesting on morphological variation of Juglans pyriformis Liebm. Revista Chapingo Serie Ciencias Forestales y del Ambiente, 17: 379–388. (in Spanish)
 
Alfonsín M.P., Abuin D.R., Díaz R., Fernández-López J. (2004): Characterisation of genetic variability in an breeding population of Juglans regia L. Investigaciones Agrarias: Sistemas y Recursos Forestales, 13: 518–526. (in Spanish).
 
Ali A.M., Zubair S.J., Abbas A.M., Jubrael J.M. (2016): Genetic diversity among Walnuts (Juglans regia) population in Kurdistan Region–Iraq using AFLP-PCR. ZANCO Journal of Pure and Applied Sciencies, 28: 50–55.
 
Amos W., Hoffman J.I. (2010): Evidence that two main bottleneck events shaped modern human genetic diversity. Proceedings of the Royal Society B: Biological Sciences, 277: 131–137. https://doi.org/10.1098/rspb.2009.1473
 
Bernard A., Barreneche T., Lheureux F., Dirlewanger E. (2018): Analysis of genetic diversity and structure in a worldwide walnut (Juglans regia L.) germplasm using SSR markers. PLoS One, 13: e0208021.
 
Buchert G.P., Rajora O.P., Hood J.V., Dancik B.P. (2002): Effects of harvesting on genetic diversity in old-growth eastern white pine in Ontario, Canada. Conservation Biology, 11: 747–758. https://doi.org/10.1046/j.1523-1739.1997.96074.x
 
Challenger A. (2003): Conceptos generales acerca de los ecosistemas templados de montaña de México y su estado de conservación. In: Sánchez O., Vega E., Peters E., Monroy-Vilchis O. (eds): Conservación de Ecosistemas Templados de Montaña. Mexico City, Instituto Nacional de Ecología (INE): 17–44. (in Spanish)
 
Christopoulos M.V., Rouskas D, Tsantili E., Bebeli P.J. (2010): Germplasm diversity and genetic relationships among walnut (Juglans regia L.) cultivars and Greek local selections revealed by Inter-Simple Sequence Repeat (ISSR) markers. Scientia Horticulturae, 125: 584–592. https://doi.org/10.1016/j.scienta.2010.05.006
 
Falush D., Stephen M., Pritchard J.K. (2003): Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics, 164: 1567–1587. https://doi.org/10.1093/genetics/164.4.1567
 
Ferrazzini D., Monteleone I., Lecce F., Belletti P. (2007): Genetic variation of common walnut (Juglans regia) in Piedmont, Northwestern Italy. Forest@ – Journal of Silviculture and Forest Ecology, 4: 386–394. (in Italian)
 
Finkeldey R., Ziehe M. (2004): Genetic implications of silvicultural regimes. Forest Ecology Management, 197: 231–232. https://doi.org/10.1016/j.foreco.2004.05.036
 
Ghanbari A., Faraji M., Behnamian M., Estaji A., Pyrayesh A., Fahim S. (2019): Genetic diversity evaluation of some walnut (Juglans regia L.) genotypes in Meshkin-Shahr by ISSR Marker. Journal of Nuts, 10: 1–8.
 
Graham A. (1976): Studies in neotropical paleobotany. II. The Miocene communities of Veracruz, México. Annals of the Missouri Botanical Garden, 63: 787–842. https://doi.org/10.2307/2395250
 
Hammer K., Khoshbakht K. (2005): Towards a ‘red list‘ for crop plant species. Genetic Resources Crop Evolution, 52: 249–265. https://doi.org/10.1007/s10722-004-7550-6
 
Hamrick J.L., Godt M.J.W. (1989): Allozyme diversity in plant species. In: Brown A.H.D., Clegg M.T., Kahler A.L., Weir B.S. (eds): Plant Population Genetics, Breeding and Germplasm Resources. Sunderland, Sinauer: 43–63.
 
Hawley G.J., Schaberg P.G., DeHayes D.H., Brissette J.C. (2005): Silviculture alters the genetic structures of an eastern hemlock forest in Maine, USA. Canadian Journal of Forest Research, 35: 143–150. https://doi.org/10.1139/x04-148
 
Hedrick P.W. (2000): Genetics of population. Sudbury, Jones and Bartlett Publishers: 675.
 
López-Gómez A.M., Williams-Linera G., Manson R.H. (2008): Tree species diversity and vegetation structure in shade coffee farms in Veracruz, Mexico. Agriculture, Ecosystems and Environment, 124: 160–172. https://doi.org/10.1016/j.agee.2007.09.008
 
Luikart G., Allendorf F.W., Cornuet J.M., Sherwin W.B. (1998): Distortion of allele frequency distributions provides a test for recent population bottlenecks. Journal of Heredity, 89: 238–247. https://doi.org/10.1093/jhered/89.3.238
 
Luna-Vega I., Alcántara Ayala O., Espinosa Organista D., Morrone J.J. (1999): Historical relationships of the Mexican cloud forest: A preliminary vicariance model applying parsimony analysis of endemicity to vascular plant taxa. Journal of Biogeography, 26: 1299–1305. https://doi.org/10.1046/j.1365-2699.1999.00361.x
 
Luna-Vega I., Alcántara Ayala O., Contreras Medina R., Ponce Vargas A. (2006): Biogeography, current knowledge, and conservation of threatened vascular plants characteristic of Mexican temperate forests. Biodiversity and Conservation, 15: 3773–3799. https://doi.org/10.1007/s10531-005-5401-1
 
Lynch M., Milligan B.G. (1994): Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3: 91–99. https://doi.org/10.1111/j.1365-294X.1994.tb00109.x
 
Manning W.E. (1960): The genus Juglans in South America and West Indies. Brittonia, 12: 1–26. https://doi.org/10.2307/2805331
 
Miller M.P. (1997): Tools for Population Genetic Analyses (TFPGA) v. 1.3: A Windows Program for Genetic Data. Computer software distributed by the author. MVSP, 3.2: 1985–2010. Kovach Computing Services. Available at: http://www.kovcomp.com (accessed Oct 22, 2011).
 
Narave-Flores H.V. (1983): Juglandaceae. Flora de Veracruz. Xalapa, Instituto Nacional de Investigaciones sobre Recursos Bióticos (INIREB): 30. (in Spanish).
 
Nei M., Li W.H. (1979): Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, 76: 5269–5273. https://doi.org/10.1073/pnas.76.10.5269
 
Ninot A., Aletà N. (2003): Identification and genetic relationship of Persian walnut genotypes using isozyme markers. Journal American Pomological Society, 57: 106–114.
 
Octavio-Aguilar P., González-Astorga J., Vovides A.P. (2009): Genetic diversity through life history of Dioon edule Lindley (Zamiaceae, Cycadales). Plant Biology, 11: 525–536. https://doi.org/10.1111/j.1438-8677.2008.00157.x
 
Peakall R., Smouse P.E. (2006): GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6: 288–295. https://doi.org/10.1111/j.1471-8286.2005.01155.x
 
Pollegioni P., Bartoli S., Cannata F., Malvolti M.E. (2003): Genetic differentiation of four Italian walnuts (Juglans regia L.) varieties by inter simple sequence repeat (ISSR). Journal of Genetic and Breeding, 57: 231–240.
 
Pollegioni P., Major Á., Bartoli S., Ducci F., Proietti R., Malvolti M.E. (2006a): Application of microsatellite and dominant molecular markers for the discrimination of species and interspecific hybrids in genus Juglans. Acta Horticulturae, 705: 191–197. https://doi.org/10.17660/ActaHortic.2005.705.23
 
Pollegioni P., Bartoli S., Malvolti M.E., Mapelli S., Bertani A., Cannata F. (2006b): Identification of Italian ecotypes of Juglans regia L. by molecular, morphological and biochemical markers. Forest@ – Journal of Silviculture and Forest Ecology, 3: 598–609. (in Italian)
 
Pollegioni P., Woeste K., Scarascia Mugnozza G., Malvolti M.E. (2009): Retrospective identification of hybridogenic walnut plants by SSR fingerprinting and parentage analysis. Molecular Breeding, 24: 321. https://doi.org/10.1007/s11032-009-9294-7
 
Pritchard J.K., Stephens M., Donnelly P. (2000): Inference of population structure using multilocus genotype data. Genetics, 155: 945–959. https://doi.org/10.1093/genetics/155.2.945
 
Putz F.E., Blate G.M., Redford K.H., Fimbel R., Robinson J. (2001): Tropical forest management and conservation of biodiversity: An overview. Conservation Biology, 15: 7–20. https://doi.org/10.1046/j.1523-1739.2001.00018.x
 
Ross-Davis A., Ostry M., Woeste K.E. (2008): Genetic diversity of butternut (Juglans cinerea) and implications for conservation. Canadian Journal of Forest Research, 38: 899–907. https://doi.org/10.1139/X08-030
 
Rzedowski J. (1965): Relaciones geográficas y posibles orígenes de la flora de México. Boletín de la Sociedad Botánica de México, 29: 121–177. (in Spanish)
 
Rzedowski J. (1996): Análisis preliminar de la flora vascular de los bosques mesófilos de montaña de México. Acta Botánica Mexicana, 35: 25–44. (in Spanish)
 
Secretaría de Medio Ambiente y Recursos Naturales (SEMARNAT) (2010): Norma Oficial Mexicana NOM-059-SEMARNAT-2010, Protección ambiental-Especies nativas de México de flora y fauna silvestres-Categorías de riesgo y especificaciones para su inclusión, exclusión o cambio – Lista de especies en riesgo. Available at: https://dof.gob.mx/nota_detalle_popup.php?codigo=5173091 (accessed Feb 17, 2012; in Spanish).
 
Servicio Forestal Oriente (2000): Programa Forestal de aprovechamiento maderable persistente del predio rústico innominado de la Congregación de San José Buenavista, Municipio de Altotonga, Veracruz. Veracruz City, Servicio Forestal Oriente: 30. (in Spanish)
 
Shah U.N., Mir J.I., Ahmed N., Fazili K.M. (2019): Genetic diversity analysis of walnut (Juglans regia L.) from Kashmir Valley using RAPD and ISSR markers. Agrotechnology, 8: 185. https://doi.org/10.35248/2168-9881.19.8.185
 
Stewart C.N., Via E.L. (1993): A rapid CTAB isolation technique useful for RAPD fingerprinting and others PCR applications. Biotechniques, 14: 748–750.
 
Wickneswari R., Ho W.S, Lee K.S., Lee C.T. (2004): Impact of disturbance on population and genetic structure of tropical forest trees. Forest Genetic, 11: 193–201.
 
Wolfe A.D. (2005): ISSR techniques for evolutionary biology. Methods in Enzymology, 395: 134–144.
 
Zietkiewicz E., Rafalski A., Labuda D. (1994): Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, 20: 176–183. https://doi.org/10.1006/geno.1994.1151
 
download PDF

© 2023 Czech Academy of Agricultural Sciences | Prohlášení o přístupnosti